Part 2. Notebook for Network and Topological Analysis in Neuroscience

Authors: Eduarda Centeno & Fernando Santos

This second part of the project will focus on the 3D visualisations we have developed.

Table of contents

  1. Imports
  2. Short recap - importing data & creating graph object
  3. Creating 3D visualisations with Plotly
  4. Acknowledgements

1. Imports

2. Short recap - importing data & creating graph object

3. Creating 3D visualisations with Plotly

First, we need to import the necessary backup script. Then, it is possible to use a list of values for most of the nodal metrics, e.g., centralities, etc.

Let's start with the visualisation of pairwise interactions

Let's now have a look at high-dimensional interactions (TDA)

4. Acknowledgements

The 1000_Functional_Connectomes dataset was downloaded from the The UCLA multimodal connectivity database.